Publications on Agent-Based Modelling

Towards the Automatic Identification of Faulty Multi-Agent Based Simulation Runs Using MASTER
CJ Wright, P McMinn and J Gallardo
Multi-Agent-Based Simulation XIII — International Workshop on Multi-Agent Simulation (MABS), 2013
[PDF]
[DOI]
[]
@inproceedings{Wright2013,
  author    = "Wright, Chris J. and McMinn, Phil and Gallardo, Julio",
  title     = "Towards the Automatic Identification of Faulty Multi-Agent Based Simulation Runs
               Using {MASTER}",
  booktitle = "Multi-Agent-Based Simulation XIII --- International Workshop on Multi-Agent
               Simulation (MABS)",
  year      = "2013",
  pages     = "153--172",
  series    = "Lecture Notes in Artificial Intelligence",
  volume    = "7838"
}

Modelling Complex Biological Systems Using an Agent-Based Approach
M Holcombe, S Adra, M Bicak, S Chin, S Coakley, AI Graham, J Green, C Greenough, D Jackson, M Kiran, S MacNeil, A Maleki-Dizaji, P McMinn, M Pogson, R Poole, E Qwarnstrom, F Ratnieks, MD Rolfe, R Smallwood, T Sun and D Worth
Integrative Biology, 2012
[DOI]
[]
@article{Holcombe2012,
  author  = "Holcombe, Mike and Adra, Salem and Bicak, Mesude and Chin, Shawn and Coakley, Simon
             and Graham, Alison I. and Green, Jeffrey and Greenough, Chris and Jackson, Duncan and
             Kiran, Mariam and MacNeil, Sheila and Maleki-Dizaji, Afsaneh and McMinn, Phil and
             Pogson, Mark and Poole, Robert and Qwarnstrom, Eva and Ratnieks, Francis and Rolfe,
             Matthew D. and Smallwood, Rod and Sun, Tao and Worth, David",
  title   = "Modelling Complex Biological Systems Using an Agent-Based Approach",
  journal = "Integrative Biology",
  year    = "2012",
  pages   = "53--64",
  number  = "1",
  volume  = "4"
}

A Multiobjective Optimisation Approach for Dynamic Inference and Refinement of Agent-Based Model Specifications
S Adra, M Kiran, P McMinn and N Walkinshaw
Congress on Evolutionary Computation (CEC), 2011
[PDF]
[DOI]
[]
@inproceedings{Adra2011,
  author    = "Adra, Salem and Kiran, Mariam and McMinn, Phil and Walkinshaw, Neil",
  title     = "A Multiobjective Optimisation Approach for Dynamic Inference and Refinement of
               Agent-Based Model Specifications",
  booktitle = "Congress on Evolutionary Computation (CEC)",
  year      = "2011",
  pages     = "2237--2244"
}

Mutation Operators for Agent-Based Models
S Adra and P McMinn
International Workshop on Mutation Analysis (Mutation), 2010
[PDF]
[DOI]
[]
@inproceedings{Adra2010,
  author    = "Adra, Salem and McMinn, Phil",
  title     = "Mutation Operators for Agent-Based Models",
  booktitle = "International Workshop on Mutation Analysis (Mutation)",
  year      = "2010",
  pages     = "151--156"
}

Validation and Discovery From Computational Biology Models
M Kiran, S Coakley, N Walkinshaw, P McMinn and M Holcombe
BioSystems, 2008
[PDF]
[DOI]
[]
@article{Kiran2008,
  author  = "Kiran, Mariam and Coakley, Simon and Walkinshaw, Neil and McMinn, Phil and Holcombe,
             Mike",
  title   = "Validation and Discovery From Computational Biology Models",
  journal = "BioSystems",
  year    = "2008",
  pages   = "141--150",
  number  = "1--2",
  volume  = "93"
}

Agent Based Modelling Helps in Understanding the Rules by Which Fibroblasts Support Keratinocyte Colony Formation
T Sun, P McMinn, M Holcombe, R Smallwood and S MacNeil
PLOS ONE, 2008
[PDF]
[DOI]
[]
@article{Sun2008,
  author  = "Sun, Tao and McMinn, Phil and Holcombe, Mike and Smallwood, Rod and MacNeil, Sheila",
  title   = "Agent Based Modelling Helps in Understanding the Rules by Which Fibroblasts Support
             Keratinocyte Colony Formation",
  journal = "PLOS ONE",
  year    = "2008",
  number  = "5",
  volume  = "3"
}

An Integrated Systems Biology Approach to Understanding the Rules of Keratinocyte Colony Formation
T Sun, P McMinn, S Coakley, M Holcombe, R Smallwood and S MacNeil
Journal of the Royal Society Interface, 2007
[PDF]
[DOI]
[]
@article{Sun2007,
  author  = "Sun, Tao and McMinn, Phil and Coakley, Simon and Holcombe, Mike and Smallwood, Rod and
             MacNeil, Sheila",
  title   = "An Integrated Systems Biology Approach to Understanding the Rules of Keratinocyte
             Colony Formation",
  journal = "Journal of the Royal Society Interface",
  year    = "2007",
  pages   = "1077--1092",
  number  = "17",
  volume  = "4"
}